Fangping Wan
  • Bio
  • Papers
  • Recent & Upcoming Talks
    • Example Talk
  • Courses
    • Hugo Blox
      • Getting Started
      • Guide
        • Project Structure
        • Configuration
        • Formatting
          • Embed Media
          • Buttons
          • Callouts
          • Cards
          • Spoilers
          • Steps
      • Reference
        • Customization
        • Internationalization (i18n)
  • Publications
    • Generative latent diffusion language modeling yields anti-infective synthetic peptides
    • Deep learning reveals antibiotics in the archaeal proteome
    • Covering Multiple Objectives with a Small Set of Solutions Using Bayesian Optimization
    • Predicting and generating antibiotics against future pathogens with ApexOracle
    • Large Scale Multi-Task Bayesian Optimization with Large Language Models
    • Antiviral discovery using sparse datasets by integrating experiments, molecular simulations, and machine learning
    • Tutorial: guidelines for the use of machine learning methods to mine genomes and proteomes for antibiotic discovery
    • Improving functional protein generation via foundation model-derived latent space likelihood optimization
    • Design of multimodal antibiotics against intracellular infections using deep learning
    • A generative artificial intelligence approach for antibiotic optimization
    • Analyzing Large-Scale Single-Cell RNA-Seq Data Using Coreset
    • Deep-learning-enabled antibiotic discovery through molecular de-extinction
    • Machine Learning for Antimicrobial Peptide Identification and Design
    • Deep learning tools to accelerate antibiotic discovery
    • Improving molecular property prediction through a task similarity enhanced transfer learning strategy
    • Deep generative models for peptide design
    • A community challenge for a pancancer drug mechanism of action inference from perturbational profile data
    • A deep-learning framework for multi-level peptide-protein interaction prediction
    • Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth
    • Crowdsourced mapping of unexplored target space of kinase inhibitors
    • An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19
    • A novel machine learning based framework for modeling transcription elongation
    • MoTSE: an interpretable task similarity estimator for small molecular property prediction tasks
    • A novel machine learning framework for automated biomedical relation extraction from large-scale literature repositories
    • Secure multiparty computation for privacy-preserving drug discovery
    • MONN: A Multi-objective Neural Network for Predicting Compound-Protein Interactions and Anities
    • EXP2SL: A Machine Learning Framework for Cell-Line-Specific Synthetic Lethality Prediction
    • ACME: pan-specific peptide-MHC class I binding prediction through attention-based deep neural networks
    • DeepCPI: A Deep Learning-based Framework for Large-scale in silico Drug Screening
    • NeoDTI: neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
  • Projects
    • Pandas
    • PyTorch
    • scikit-learn
  • Blog
    • 🎉 Easily create your own simple yet highly customizable blog
    • 🧠 Sharpen your thinking with a second brain
    • 📈 Communicate your results effectively with the best data visualizations
    • Teach academic courses
    • ✅ Manage your projects
  • Experience

MoTSE: an interpretable task similarity estimator for small molecular property prediction tasks

Jan 16, 2021·
Han Li
,
Xinyi Zhao
,
Shuya Li
,
Fangping Wan
,
Dan Zhao
,
And Jianyang Zeng
· 0 min read
Site
Type
Journal article
Publication
RECOMB, 2021
Last updated on Jan 16, 2021
← A novel machine learning based framework for modeling transcription elongation Feb 1, 2021
A novel machine learning framework for automated biomedical relation extraction from large-scale literature repositories Jun 8, 2020 →